IL_6S05_126

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*UA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_126 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.289

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6S05|1|x|U|83
6S05|1|x|A|84
6S05|1|x|G|85
*
6S05|1|x|U|96
6S05|1|x|A|97

Current chains

Chain x

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

60S ribosomal protein L20-A

Chain b

60S ribosomal protein L7-A