IL_6S05_139
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUCAG*CGGCC
- Length
- 11 nucleotides
- Bulged bases
- 6S05|1|A|A|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S05_139 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3042
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6S05|1|A|G|1382
6S05|1|A|G|1383
6S05|1|A|U|1384
6S05|1|A|C|1385
6S05|1|A|A|1386
6S05|1|A|G|1387
*
6S05|1|A|C|1420
6S05|1|A|G|1421
6S05|1|A|G|1422
6S05|1|A|C|1423
6S05|1|A|C|1424
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain G
- 60S ribosomal protein L6-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: