IL_6S05_158

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

6S05|1|x|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_158 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.1843

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6S05|1|x|A|84
6S05|1|x|G|85
6S05|1|x|U|86
6S05|1|x|G|87
*
6S05|1|x|C|94
6S05|1|x|A|95
6S05|1|x|U|96

Current chains

Chain x

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

60S ribosomal protein L20-A

Chain b

60S ribosomal protein L7-A