IL_6S0K_098

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6S0K|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_098 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6S0K|1|A|C|2636
6S0K|1|A|U|2637
6S0K|1|A|G|2638
6S0K|1|A|A|2639
6S0K|1|A|G|2640
*
6S0K|1|A|C|2774
6S0K|1|A|G|2775
6S0K|1|A|A|2776
6S0K|1|A|G|2777
6S0K|1|A|A|2778
6S0K|1|A|U|2779
6S0K|1|A|G|2780
6S0K|1|A|A|2781
6S0K|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13