IL_6S0X_005

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_005 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.2653

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6S0X|1|A|G|190
6S0X|1|A|A|191
6S0X|1|A|G|192
6S0X|1|A|A|193
6S0X|1|A|A|194
6S0X|1|A|C|195
6S0X|1|A|U|196
6S0X|1|A|G|197
*
6S0X|1|A|C|204
6S0X|1|A|U|205
6S0X|1|A|U|206
6S0X|1|A|A|207
6S0X|1|A|G|208
6S0X|1|A|U|209
6S0X|1|A|A|210
6S0X|1|A|C|211
6S0X|1|A|C|212

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28