IL_6S0X_015

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6S0X|1|A|G|846, 6S0X|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_015 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.0735

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6S0X|1|A|G|719
6S0X|1|A|A|720
6S0X|1|A|A|721
6S0X|1|A|A|722
6S0X|1|A|C|723
*
6S0X|1|A|G|844
6S0X|1|A|A|845
6S0X|1|A|G|846
6S0X|1|A|A|847
6S0X|1|A|U|848
6S0X|1|A|A|849
6S0X|1|A|G|850
6S0X|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15