IL_6S0X_074

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUC*GGC

Length

7 nucleotides

Bulged bases

6S0X|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_074 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.309

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6S0X|1|A|G|2427
6S0X|1|A|U|2428
6S0X|1|A|U|2429
6S0X|1|A|C|2430
*
6S0X|1|A|G|2441
6S0X|1|A|G|2442
6S0X|1|A|C|2443

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain J

50S ribosomal protein L15