IL_6S0X_077

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_077 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.4514

The information below is about IL_7A0S_087

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6S0X|1|A|C|2493
6S0X|1|A|C|2494
6S0X|1|A|A|2495
6S0X|1|A|A|2496
6S0X|1|A|G|2497
*
6S0X|1|A|C|2507
6S0X|1|A|G|2508
6S0X|1|A|A|2509
6S0X|1|A|C|2510
6S0X|1|A|G|2511

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain K

50S ribosomal protein L16