3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6S0X|1|A|A|2803, 6S0X|1|A|G|2804, 6S0X|1|A|U|2806, 6S0X|1|A|G|2807, 6S0X|1|A|A|2808
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_083 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.5921
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6S0X|1|A|U|2663
6S0X|1|A|U|2664
6S0X|1|A|G|2665
6S0X|1|A|A|2666
6S0X|1|A|G|2667
*
6S0X|1|A|C|2801
6S0X|1|A|A|2802
6S0X|1|A|A|2803
6S0X|1|A|G|2804
6S0X|1|A|A|2805
6S0X|1|A|U|2806
6S0X|1|A|G|2807
6S0X|1|A|A|2808
6S0X|1|A|G|2809

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain H
50S ribosomal protein L13

Coloring options:


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