IL_6S0X_106

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6S0X|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_106 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3218

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6S0X|1|a|G|147
6S0X|1|a|G|148
6S0X|1|a|A|149
6S0X|1|a|U|150
6S0X|1|a|A|151
6S0X|1|a|A|152
6S0X|1|a|C|153
*
6S0X|1|a|G|168
6S0X|1|a|C|169
6S0X|1|a|U|170
6S0X|1|a|A|171
6S0X|1|a|A|172
6S0X|1|a|U|173
6S0X|1|a|A|174
6S0X|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20