3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
CGUAG*UGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_117 not in the Motif Atlas
Homologous match to IL_6CZR_135
Geometric discrepancy: 0.2219
The information below is about IL_6CZR_135
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.6
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6S0X|1|a|C|588
6S0X|1|a|G|589
6S0X|1|a|U|590
6S0X|1|a|A|591
6S0X|1|a|G|592
*
6S0X|1|a|U|765
6S0X|1|a|G|766
6S0X|1|a|A|767
6S0X|1|a|U|768
6S0X|1|a|G|769

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15

Coloring options:


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