3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
UGUGUAG*CGCAGAGAUA
Length
17 nucleotides
Bulged bases
6S0X|1|a|A|710
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_125 not in the Motif Atlas
Geometric match to IL_8CRE_436
Geometric discrepancy: 0.3962
The information below is about IL_8CRE_436
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_89047.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW
Number of instances in this motif group
1

Unit IDs

6S0X|1|a|U|690
6S0X|1|a|G|691
6S0X|1|a|U|692
6S0X|1|a|G|693
6S0X|1|a|U|694
6S0X|1|a|A|695
6S0X|1|a|G|696
*
6S0X|1|a|C|707
6S0X|1|a|G|708
6S0X|1|a|C|709
6S0X|1|a|A|710
6S0X|1|a|G|711
6S0X|1|a|A|712
6S0X|1|a|G|713
6S0X|1|a|A|714
6S0X|1|a|U|715
6S0X|1|a|A|716

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11

Coloring options:


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