3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GG*UCAUC
Length
7 nucleotides
Bulged bases
6S0X|1|a|C|1210, 6S0X|1|a|A|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_137 not in the Motif Atlas
Homologous match to IL_5J7L_048
Geometric discrepancy: 0.3999
The information below is about IL_5J7L_048
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6S0X|1|a|G|1068
6S0X|1|a|G|1069
*
6S0X|1|a|U|1209
6S0X|1|a|C|1210
6S0X|1|a|A|1211
6S0X|1|a|U|1212
6S0X|1|a|C|1213

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14 type Z
Chain v
Ribosome hibernation promoting factor

Coloring options:


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