3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S0X_139 not in the Motif Atlas
Geometric match to IL_3BNR_012
Geometric discrepancy: 0.1615
The information below is about IL_3BNR_012
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6S0X|1|a|G|1072
6S0X|1|a|U|1073
6S0X|1|a|C|1074
*
6S0X|1|a|G|1203
6S0X|1|a|U|1204
6S0X|1|a|C|1205

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain e
30S ribosomal protein S5
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain v
Ribosome hibernation promoting factor

Coloring options:


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