IL_6S0X_147

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0X_147 not in the Motif Atlas

Geometric match to IL_4P3T_006

Geometric discrepancy: 0.1472

The information below is about IL_4P3T_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6S0X|1|a|G|1415
6S0X|1|a|U|1416
6S0X|1|a|C|1417
*
6S0X|1|a|G|1505
6S0X|1|a|U|1506
6S0X|1|a|C|1507

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Ribosome hibernation promoting factor