IL_6S0X_178
3D structure
- PDB id
- 6S0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AUGUGG*CACACGU
- Length
- 13 nucleotides
- Bulged bases
- 6S0X|1|a|A|1237
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S0X_178 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3911
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6S0X|1|a|A|958
6S0X|1|a|U|959
6S0X|1|a|G|960
6S0X|1|a|U|961
6S0X|1|a|G|962
6S0X|1|a|G|963
*
6S0X|1|a|C|1236
6S0X|1|a|A|1237
6S0X|1|a|C|1238
6S0X|1|a|A|1239
6S0X|1|a|C|1240
6S0X|1|a|G|1241
6S0X|1|a|U|1242
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S19
- Chain v
- Ribosome hibernation promoting factor
Coloring options: