IL_6S0Z_007

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0Z_007 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.0764

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6S0Z|1|A|G|190
6S0Z|1|A|A|191
6S0Z|1|A|G|192
6S0Z|1|A|A|193
6S0Z|1|A|A|194
6S0Z|1|A|C|195
6S0Z|1|A|U|196
6S0Z|1|A|G|197
*
6S0Z|1|A|C|204
6S0Z|1|A|U|205
6S0Z|1|A|U|206
6S0Z|1|A|A|207
6S0Z|1|A|G|208
6S0Z|1|A|U|209
6S0Z|1|A|A|210
6S0Z|1|A|C|211
6S0Z|1|A|C|212

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28