IL_6S12_007

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_007 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.1738

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6S12|1|A|G|190
6S12|1|A|A|191
6S12|1|A|G|192
6S12|1|A|A|193
6S12|1|A|A|194
6S12|1|A|C|195
6S12|1|A|U|196
6S12|1|A|G|197
*
6S12|1|A|C|204
6S12|1|A|U|205
6S12|1|A|U|206
6S12|1|A|A|207
6S12|1|A|G|208
6S12|1|A|U|209
6S12|1|A|A|210
6S12|1|A|C|211
6S12|1|A|C|212

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28