IL_6S12_017

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6S12|1|A|G|846, 6S12|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_017 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1228

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|719
6S12|1|A|A|720
6S12|1|A|A|721
6S12|1|A|A|722
6S12|1|A|C|723
*
6S12|1|A|G|844
6S12|1|A|A|845
6S12|1|A|G|846
6S12|1|A|A|847
6S12|1|A|U|848
6S12|1|A|A|849
6S12|1|A|G|850
6S12|1|A|C|851

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15