IL_6S12_025

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUG*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_025 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.2043

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6S12|1|A|U|889
6S12|1|A|G|890
6S12|1|A|A|891
6S12|1|A|U|892
6S12|1|A|G|893
*
6S12|1|A|U|975
6S12|1|A|U|976
6S12|1|A|A|977
6S12|1|A|A|978

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L30