IL_6S12_033

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_033 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.2914

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6S12|1|A|U|1048
6S12|1|A|C|1049
6S12|1|A|C|1050
6S12|1|A|C|1051
6S12|1|A|A|1052
6S12|1|A|A|1053
6S12|1|A|A|1054
6S12|1|A|A|1055
*
6S12|1|A|U|1194
6S12|1|A|A|1195

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20