IL_6S12_045

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6S12|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1787

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6S12|1|A|C|1246
6S12|1|A|G|1247
6S12|1|A|U|1248
6S12|1|A|U|1249
6S12|1|A|G|1250
6S12|1|A|A|1251
6S12|1|A|A|1252
6S12|1|A|G|1253
*
6S12|1|A|U|1272
6S12|1|A|G|1273
6S12|1|A|G|1274
6S12|1|A|A|1275
6S12|1|A|G|1276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20