IL_6S12_048

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

6S12|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_048 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.4038

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6S12|1|A|G|1356
6S12|1|A|G|1357
6S12|1|A|A|1358
6S12|1|A|A|1359
6S12|1|A|G|1360
*
6S12|1|A|C|1368
6S12|1|A|G|1369
6S12|1|A|C|1370

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L22