IL_6S12_076

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_076 not in the Motif Atlas

Geometric match to IL_4EYA_003

Geometric discrepancy: 0.3089

The information below is about IL_4EYA_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6S12|1|A|A|2123
6S12|1|A|U|2124
6S12|1|A|U|2125
6S12|1|A|C|2126
*
6S12|1|A|G|2217
6S12|1|A|G|2218
6S12|1|A|C|2219
6S12|1|A|U|2220

Current chains

Chain A

23S ribosomal RNA

Nearby chains