IL_6S12_120

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S12_120 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.1358

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|1710
6S12|1|A|G|1711
6S12|1|A|A|1712
6S12|1|A|A|1713
6S12|1|A|C|1714
6S12|1|A|U|1715
6S12|1|A|C|1716
6S12|1|A|G|1717
6S12|1|A|G|1718
*
6S12|1|A|C|2017
6S12|1|A|U|2018
6S12|1|A|G|2019
6S12|1|A|U|2020
6S12|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain I

50S ribosomal protein L14