IL_6S13_008

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CUUAGUAG*CGAAAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_008 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1796

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6S13|1|A|C|241
6S13|1|A|U|242
6S13|1|A|U|243
6S13|1|A|A|244
6S13|1|A|G|245
6S13|1|A|U|246
6S13|1|A|A|247
6S13|1|A|G|248
*
6S13|1|A|C|256
6S13|1|A|G|257
6S13|1|A|A|258
6S13|1|A|A|259
6S13|1|A|A|260
6S13|1|A|U|261
6S13|1|A|G|262

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain J

50S ribosomal protein L15