3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_012 not in the Motif Atlas
Homologous match to IL_4WF9_017
Geometric discrepancy: 0.1652
The information below is about IL_4WF9_017
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6S13|1|A|C|607
6S13|1|A|C|608
6S13|1|A|U|609
*
6S13|1|A|A|618
6S13|1|A|U|619
6S13|1|A|G|620

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21

Coloring options:


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