3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
GGAAG*CGC
Length
8 nucleotides
Bulged bases
6S13|1|A|G|1369
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S13_049 not in the Motif Atlas
Homologous match to IL_5J7L_291
Geometric discrepancy: 0.3845
The information below is about IL_5J7L_291
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

6S13|1|A|G|1356
6S13|1|A|G|1357
6S13|1|A|A|1358
6S13|1|A|A|1359
6S13|1|A|G|1360
*
6S13|1|A|C|1368
6S13|1|A|G|1369
6S13|1|A|C|1370

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L22

Coloring options:


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