IL_6S13_070

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

6S13|1|A|A|1964, 6S13|1|A|A|1965, 6S13|1|A|U|1966, 6S13|1|A|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_070 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.2706

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6S13|1|A|C|1961
6S13|1|A|G|1962
6S13|1|A|A|1963
6S13|1|A|A|1964
6S13|1|A|A|1965
6S13|1|A|U|1966
6S13|1|A|U|1967
6S13|1|A|C|1968
6S13|1|A|C|1969
6S13|1|A|U|1970
6S13|1|A|U|1971
6S13|1|A|G|1972
*
6S13|1|A|C|1988
6S13|1|A|C|1989
6S13|1|A|C|1990
6S13|1|A|G|1991

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA