IL_6S13_072

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6S13|1|A|C|2082, 6S13|1|A|U|2640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_072 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6S13|1|A|A|2081
6S13|1|A|C|2082
6S13|1|A|G|2083
*
6S13|1|A|C|2639
6S13|1|A|U|2640
6S13|1|A|A|2641
6S13|1|A|U|2642

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32