IL_6S13_093

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6S13|1|A|G|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_093 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.1563

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6S13|1|A|U|2663
6S13|1|A|U|2664
6S13|1|A|G|2665
6S13|1|A|A|2666
6S13|1|A|G|2667
*
6S13|1|A|C|2801
6S13|1|A|A|2802
6S13|1|A|A|2803
6S13|1|A|G|2804
6S13|1|A|A|2805
6S13|1|A|U|2806
6S13|1|A|G|2807
6S13|1|A|A|2808
6S13|1|A|G|2809

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain H

50S ribosomal protein L13