IL_6S13_128

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

6S13|1|a|A|517, 6S13|1|a|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_128 not in the Motif Atlas

Geometric match to IL_3R2D_001

Geometric discrepancy: 0.2438

The information below is about IL_3R2D_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6S13|1|a|C|512
6S13|1|a|G|513
6S13|1|a|G|514
6S13|1|a|C|515
6S13|1|a|U|516
6S13|1|a|A|517
6S13|1|a|A|518
6S13|1|a|C|519
*
6S13|1|a|G|548
6S13|1|a|G|549

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12