IL_6S13_129
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6S13|1|a|A|540
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S13_129 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.4964
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6S13|1|a|G|523
6S13|1|a|U|524
6S13|1|a|G|525
6S13|1|a|C|526
6S13|1|a|C|527
6S13|1|a|A|528
6S13|1|a|G|529
*
6S13|1|a|C|536
6S13|1|a|G|537
6S13|1|a|G|538
6S13|1|a|U|539
6S13|1|a|A|540
6S13|1|a|A|541
6S13|1|a|U|542
6S13|1|a|A|543
6S13|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
- Chain v
- Ribosome hibernation promoting factor
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