IL_6S13_135

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_135 not in the Motif Atlas

Homologous match to IL_6CZR_139

Geometric discrepancy: 0.4073

The information below is about IL_6CZR_139

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

6S13|1|a|G|662
6S13|1|a|A|663
*
6S13|1|a|U|759
6S13|1|a|G|760
6S13|1|a|A|761
6S13|1|a|C|762

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain o

30S ribosomal protein S15