IL_6S13_155

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6S13|1|a|C|1410, 6S13|1|a|A|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S13_155 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.3153

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6S13|1|a|C|1409
6S13|1|a|C|1410
6S13|1|a|G|1411
*
6S13|1|a|C|1512
6S13|1|a|A|1513
6S13|1|a|A|1514
6S13|1|a|G|1515

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Ribosome hibernation promoting factor