IL_6S47_011

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUU*AGUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_011 not in the Motif Atlas

Geometric match to IL_5U3G_002

Geometric discrepancy: 0.3915

The information below is about IL_5U3G_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_22373.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|G|176
6S47|1|AA|U|177
6S47|1|AA|U|178
*
6S47|1|AA|A|238
6S47|1|AA|G|239
6S47|1|AA|U|240
6S47|1|AA|G|241
6S47|1|AA|C|242

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AN

60S ribosomal protein L13-A

Chain Aj

60S ribosomal protein L35-A

Chain Al

60S ribosomal protein L37-A