IL_6S47_033

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

6S47|1|AA|G|908, 6S47|1|AA|A|920, 6S47|1|AA|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_033 not in the Motif Atlas

Homologous match to IL_5TBW_033

Geometric discrepancy: 0.0675

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6S47|1|AA|G|907
6S47|1|AA|G|908
6S47|1|AA|G|909
*
6S47|1|AA|U|919
6S47|1|AA|A|920
6S47|1|AA|A|921
6S47|1|AA|U|922
6S47|1|AA|C|923

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain AP

60S ribosomal protein L15-A

Chain AR

60S ribosomal protein L17-A

Chain Al

60S ribosomal protein L37-A