IL_6S47_038
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_038 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0696
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6S47|1|AA|G|991
6S47|1|AA|A|992
6S47|1|AA|G|993
6S47|1|AA|G|994
6S47|1|AA|U|995
6S47|1|AA|A|996
6S47|1|AA|A|997
*
6S47|1|AA|U|1052
6S47|1|AA|A|1053
6S47|1|AA|A|1054
6S47|1|AA|A|1055
6S47|1|AA|U|1056
6S47|1|AA|A|1057
6S47|1|AA|U|1058
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AG
- 60S ribosomal protein L5
- Chain AI
- 60S ribosomal protein L7-A
- Chain AL
- 60S ribosomal protein L10
- Chain AU
- 60S ribosomal protein L20-A
- Chain AV
- 60S ribosomal protein L21-A
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