IL_6S47_043

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

6S47|1|AA|C|1016, 6S47|1|AA|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_043 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.1748

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6S47|1|AA|G|1013
6S47|1|AA|U|1014
6S47|1|AA|U|1015
6S47|1|AA|C|1016
6S47|1|AA|C|1017
6S47|1|AA|G|1018
*
6S47|1|AA|U|1034
6S47|1|AA|G|1035
6S47|1|AA|A|1036
6S47|1|AA|C|1037

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L5

Chain AM

60S ribosomal protein L11-B