IL_6S47_053

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6S47|1|AA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_053 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.1385

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6S47|1|AA|U|1218
6S47|1|AA|C|1219
6S47|1|AA|U|1220
6S47|1|AA|A|1221
6S47|1|AA|G|1222
6S47|1|AA|A|1223
6S47|1|AA|C|1224
6S47|1|AA|A|1225
6S47|1|AA|G|1226
*
6S47|1|AA|C|1283
6S47|1|AA|C|1284
6S47|1|AA|G|1285
6S47|1|AA|A|1286
6S47|1|AA|A|1287

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AU

60S ribosomal protein L20-A

Chain Ao

Ubiquitin-60S ribosomal protein L40