3D structure

PDB id
6S47 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
CGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
6S47|1|AA|U|1716, 6S47|1|AA|A|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S47_072 not in the Motif Atlas
Homologous match to IL_5TBW_073
Geometric discrepancy: 0.0924
The information below is about IL_5TBW_073
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

6S47|1|AA|C|1711
6S47|1|AA|G|1712
6S47|1|AA|G|1713
6S47|1|AA|A|1714
6S47|1|AA|A|1715
6S47|1|AA|U|1716
6S47|1|AA|U|1717
*
6S47|1|AA|G|1727
6S47|1|AA|G|1728
6S47|1|AA|A|1729
6S47|1|AA|G|1730
6S47|1|AA|A|1731
6S47|1|AA|U|1732
6S47|1|AA|G|1733

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AT
60S ribosomal protein L19-A
Chain Ab
60S ribosomal protein L27-A
Chain Ae
60S ribosomal protein L30
Chain Ar
60S ribosomal protein L43-A
Chain BM
40S ribosomal protein S11-A
Chain BO
40S ribosomal protein S13

Coloring options:


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