IL_6S47_072
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 6S47|1|AA|U|1716, 6S47|1|AA|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_072 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.0924
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6S47|1|AA|C|1711
6S47|1|AA|G|1712
6S47|1|AA|G|1713
6S47|1|AA|A|1714
6S47|1|AA|A|1715
6S47|1|AA|U|1716
6S47|1|AA|U|1717
*
6S47|1|AA|G|1727
6S47|1|AA|G|1728
6S47|1|AA|A|1729
6S47|1|AA|G|1730
6S47|1|AA|A|1731
6S47|1|AA|U|1732
6S47|1|AA|G|1733
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein L19-A
- Chain Ab
- 60S ribosomal protein L27-A
- Chain Ae
- 60S ribosomal protein L30
- Chain Ar
- 60S ribosomal protein L43-A
- Chain BM
- 40S ribosomal protein S11-A
- Chain BO
- 40S ribosomal protein S13
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