IL_6S47_098
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_098 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.1021
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6S47|1|AA|U|2718
6S47|1|AA|U|2719
6S47|1|AA|G|2720
6S47|1|AA|A|2721
*
6S47|1|AA|U|2735
6S47|1|AA|A|2736
6S47|1|AA|C|2737
6S47|1|AA|A|2738
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L5
- Chain AS
- 60S ribosomal protein L18-A
- Chain AV
- 60S ribosomal protein L21-A
- Chain Ad
- 60S ribosomal protein L29
- Chain Aq
- 60S ribosomal protein L42-A
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