IL_6S47_112

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6S47|1|AA|A|3142, 6S47|1|AA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_112 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0765

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6S47|1|AA|C|3004
6S47|1|AA|A|3005
6S47|1|AA|A|3006
6S47|1|AA|U|3007
*
6S47|1|AA|A|3139
6S47|1|AA|G|3140
6S47|1|AA|A|3141
6S47|1|AA|A|3142
6S47|1|AA|C|3143
6S47|1|AA|G|3144

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AQ

60S ribosomal protein L16-A