IL_6S47_115

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6S47|1|AA|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_115 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.0861

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|U|3047
6S47|1|AA|A|3048
6S47|1|AA|A|3049
6S47|1|AA|U|3050
6S47|1|AA|U|3051
*
6S47|1|AA|A|3091
6S47|1|AA|C|3092
6S47|1|AA|C|3093
6S47|1|AA|A|3094

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AX

60S ribosomal protein L23-A

Chain AY

60S ribosomal protein L24-A