IL_6S47_130

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6S47|1|AA|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_130 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0803

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6S47|1|AA|G|3328
6S47|1|AA|U|3329
6S47|1|AA|A|3330
*
6S47|1|AA|U|3373
6S47|1|AA|U|3374
6S47|1|AA|A|3375
6S47|1|AA|A|3376
6S47|1|AA|G|3377
6S47|1|AA|C|3378

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AY

60S ribosomal protein L24-A

Chain Af

60S ribosomal protein L31-A