IL_6S47_176

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6S47|1|BA|A|579, 6S47|1|BA|U|581, 6S47|1|BA|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_176 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.0915

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|G|562
6S47|1|BA|U|563
6S47|1|BA|G|564
6S47|1|BA|C|565
6S47|1|BA|C|566
6S47|1|BA|A|567
6S47|1|BA|G|568
*
6S47|1|BA|C|575
6S47|1|BA|G|576
6S47|1|BA|G|577
6S47|1|BA|U|578
6S47|1|BA|A|579
6S47|1|BA|A|580
6S47|1|BA|U|581
6S47|1|BA|U|582
6S47|1|BA|C|583

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BE

40S ribosomal protein S3

Chain BY

40S ribosomal protein S23-A

Chain Bf

40S ribosomal protein S30-A