IL_6S47_177

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6S47|1|BA|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_177 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1235

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|G|616
6S47|1|BA|U|617
6S47|1|BA|U|618
6S47|1|BA|A|619
6S47|1|BA|A|620
6S47|1|BA|A|621
6S47|1|BA|A|622
*
6S47|1|BA|U|1104
6S47|1|BA|C|1105

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BY

40S ribosomal protein S23-A

Chain Bb

40S ribosomal protein S26-B