IL_6S47_179
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S47_179 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0901
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6S47|1|BA|C|627
6S47|1|BA|G|628
6S47|1|BA|U|629
6S47|1|BA|A|630
6S47|1|BA|G|631
*
6S47|1|BA|U|968
6S47|1|BA|C|969
6S47|1|BA|A|970
6S47|1|BA|A|971
6S47|1|BA|G|972
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BM
- 40S ribosomal protein S11-A
- Chain BO
- 40S ribosomal protein S13
- Chain BX
- 40S ribosomal protein S22-A
- Chain BY
- 40S ribosomal protein S23-A
Coloring options: