IL_6S47_188

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6S47|1|BA|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_188 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1046

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6S47|1|BA|C|874
6S47|1|BA|G|875
6S47|1|BA|G|876
6S47|1|BA|G|877
6S47|1|BA|G|878
*
6S47|1|BA|C|950
6S47|1|BA|A|951
6S47|1|BA|A|952
6S47|1|BA|G|953

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BC

40S ribosomal protein S1-A

Chain BO

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S26-B