IL_6S47_199

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6S47|1|BA|C|1158, 6S47|1|BA|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S47_199 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1043

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6S47|1|BA|A|1157
6S47|1|BA|C|1158
6S47|1|BA|C|1159
6S47|1|BA|A|1160
*
6S47|1|BA|U|1617
6S47|1|BA|C|1618
6S47|1|BA|C|1619
6S47|1|BA|C|1620
6S47|1|BA|U|1621

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BG

Rps5p

Chain BR

40S ribosomal protein S16-A

Chain Bd

40S ribosomal protein S28-A